Engineering Recombinant DNA Vaccines: Goals and Outcomes

 
Nekeisha Nogal, Gabriel Pineda,
Keith Neeves, Judy Schoonmaker,
Delphi Chatterjee, Diane Ordway,
Erika Tinoco
 
Goals and Outcomes
 
Unit
: Engineering recombinant DNA vaccines
Goal: To understand the molecular biology sequence of
antigen 
 vaccine
Goals for Today: 
Making a recombinant DNA vector
Students will understand how restriction enzymes work
Students will understand how DNA ligase works
Outcomes
1.
Students will be able to 
organize
 the main steps in DNA
vaccine development
2.
Students will be able to 
recognize 
the specificity of
ligation sites following cleavage by restriction enzymes
3.
Students will be able to 
create
 a script that 
applies
 the
concepts of gene insertion
 
 
 
 
Course Context
 
Biology I or II
Freshmen
 ~100 students
Prior knowledge
DNA structure
Central dogma
Restriction enzymes
Vaccines and immune response
 
DNA Vaccine
Have you gotten 
YOUR
 HPV Vaccine?
HPV Vaccine
http://hplusmagazine.com/2009/08/31/take-shot/
Accessed 8/3/12
 
Steps in DNA vaccine development
 
Identify HPV immunogenic protein
 
Choose a vector
 
Culture transformed bacterial  host cells
 
Purify recombinant vector
 
Deliver recombinant HPV vector vaccine
 
Determine coding DNA for insert
 
Cut vector and DNA insert with restriction enzymes
 
Ligate DNA insert into vector
 
Steps in DNA vaccine development
 
Identify HPV immunogenic protein
 
Choose a vector
 
Culture transformed bacterial host cells
 
Purify recombinant vector
 
Deliver recombinant HPV vector vaccine
 
Determine coding DNA for insert
 
Cut vector and DNA insert with restriction enzymes
 
Ligate DNA insert into vector
Campbell Essential Biology with
Physiology, Simon et al., 3
rd
 Ed.
Cut vector and
DNA insert with
restriction
enzymes
 
The restriction enzymes 
RE1
 and 
RE2
 cut along the red lines:
 
 
 
 
 
If one sample of DNA was cut with RE1 and another with RE2, and
these two samples were mixed and treated with DNA ligase, what
would happen?
 
A. DNA cut with RE1 and RE2 would be ligated (joined together)
     with no preference.
B. The RE1-cut DNA would be ligated to itself.
C. The RE2-cut DNA would be ligated to itself.
D. Both B and C.
E. No DNAs would be ligated.
 
1.
Write a script for this 
movie 
using these
terms:
A.
Restriction enzyme
B.
Plasmid
C.
DNA ligase
D.
DNA insert
E.
Sticky ends
F.
Restriction site
2.
Peer review script
3.
Turn in revised script to teacher.
 
http://www.youtube.com/watch?v=aA5fyWJh5S0
 
Ligate HPV specific DNA insert into vector
 
DNA Vaccine
Have you gotten 
YOUR
 HPV Vaccine?
HPV Vaccine
http://hplusmagazine.com/2009/08/31/take-shot/
Accessed 8/3/12
 
Homework Assignment
(summative assessment)
 
Make a concept map that shows how a scientist would
proceed from a gene sequence for a protein to a vaccine
using recombinant technology.
 
You should use the terms below as a skeleton framework.
Add as many additional terms as you feel appropriate.
 Restriction enzyme
 
1.
Vector
2.
DNA ligase
3.
DNA insert
4.
Sticky ends
5.
Vaccine
 
If you had an HPV-specific DNA insert that has sticky
ends created by digestion with 
Bam
HI, which of the
three restriction enzymes below could be used to cut a
vector to create a recombinant vector vaccine for HPV?
 
A.
Bam
HI only
B.
Bam
HI and 
Bsl
I
C.
Bsl
I  and 
Eco
RI
D.
Eco
RI only
E.
Eco
RI and 
Bam
HI
 
 
Exam Question
(summative assessment)
 
Bam
HI – 5’-G
|
GATCC
Bsl
I – 5’-C
|
GATCG
Eco
RI –  5’-G
|
AATTC
 
Alignment
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In a Biology course, students will learn about DNA vaccine development, including steps like gene insertion, ligation, and vector selection. The focus is on understanding the process and creating recombinant HPV vector vaccines.

  • DNA vaccines
  • Recombinant DNA
  • Biology course
  • Vaccine development
  • Molecular biology

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  1. Nekeisha Nogal, Gabriel Pineda, Keith Neeves, Judy Schoonmaker, Delphi Chatterjee, Diane Ordway, Erika Tinoco

  2. Goals and Outcomes Unit: Engineering recombinant DNA vaccines Goal: To understand the molecular biology sequence of antigen vaccine Goals for Today: Making a recombinant DNA vector Students will understand how restriction enzymes work Students will understand how DNA ligase works Outcomes 1. Students will be able to organize the main steps in DNA vaccine development 2. Students will be able to recognize the specificity of ligation sites following cleavage by restriction enzymes 3. Students will be able to create a script that applies the concepts of gene insertion

  3. Course Context Biology I or II Freshmen ~100 students Prior knowledge DNA structure Central dogma Restriction enzymes Vaccines and immune response

  4. Have you gotten YOUR HPV Vaccine? 20 million Americans currently infected 6 million infected/yr 50% sexually active people have HPV at some point Recombinant Vector HPV Vaccine http://hplusmagazine.com/2009/08/31/take-shot/ Accessed 8/3/12

  5. Steps in DNA vaccine development Cut vector and DNA insert with restriction enzymes Ligate DNA insert into vector Purify recombinant vector Deliver recombinant HPV vector vaccine Determine coding DNA for insert Identify HPV immunogenic protein Choose a vector Culture transformed bacterial host cells

  6. Steps in DNA vaccine development Identify HPV immunogenic protein Determine coding DNA for insert Choose a vector Cut vector and DNA insert with restriction enzymes Ligate DNA insert into vector Culture transformed bacterial host cells Purify recombinant vector Deliver recombinant HPV vector vaccine

  7. Cut vector and DNA insert with restriction enzymes Campbell Essential Biology with Physiology, Simon et al., 3rd Ed.

  8. The restriction enzymes RE1 and RE2 cut along the red lines: If one sample of DNA was cut with RE1 and another with RE2, and these two samples were mixed and treated with DNA ligase, what would happen? A. DNA cut with RE1 and RE2 would be ligated (joined together) with no preference. B. The RE1-cut DNA would be ligated to itself. C. The RE2-cut DNA would be ligated to itself. D. Both B and C. E. No DNAs would be ligated.

  9. Ligate HPV specific DNA insert into vector 1. Write a script for this movie using these terms: A. Restriction enzyme B. Plasmid C. DNA ligase D. DNA insert E. Sticky ends F. Restriction site 2. Peer review script 3. Turn in revised script to teacher. http://www.youtube.com/watch?v=aA5fyWJh5S0

  10. Have you gotten YOUR HPV Vaccine? 20 million Americans currently infected 6 million infected/yr 50% sexually active people have HPV at some point Recombinant Vector HPV Vaccine http://hplusmagazine.com/2009/08/31/take-shot/ Accessed 8/3/12

  11. Homework Assignment (summative assessment) Make a concept map that shows how a scientist would proceed from a gene sequence for a protein to a vaccine using recombinant technology. You should use the terms below as a skeleton framework. Add as many additional terms as you feel appropriate. Restriction enzyme 1. 2. 3. 4. 5. Vector DNA ligase DNA insert Sticky ends Vaccine

  12. Exam Question (summative assessment) If you had an HPV-specific DNA insert that has sticky ends created by digestion with BamHI, which of the three restriction enzymes below could be used to cut a vector to create a recombinant vector vaccine for HPV? A. BamHI only B. BamHI and BslI C. BslI and EcoRI D. EcoRI only E. EcoRI and BamHI BamHI 5 -G|GATCC BslI 5 -C|GATCG EcoRI 5 -G|AATTC

  13. Alignment Learning Objective Assessment Active learning Low Order/ High Order Students will be able to organize the main steps in DNA vaccine development Formative: Self- check based on key Strip sequence Low Order Bloom 3 Students will be able to recognize the specificity of ligation sites following cleavage by restriction enzymes Formative: Clicker question-two polls Clicker question + peer instruction High Order Bloom 3-4 Students will be able to create a script that synthesizes the key concepts of gene insertion Formative: Peer evaluation Writing script of movie High Order Bloom 5 Summative: Grade the script

  14. Diversity Different learning styles: Kinesthetic strip sequence Visual movie Writing script Auditory movie sounds Different personalities: Activities that appeal to introverts and extroverts

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