Advanced MRI Protocols for Neuroimaging Studies
MRI WWADNI 2015
MRI WWADNI 2015
Mayo
Cliff Jack
Cliff Jack
Bret Borowski
Bret Borowski
Matt Bernstein
Matt Bernstein
Arvin Forghanian-Arani
Arvin Forghanian-Arani
Jeff Gunter
Jeff Gunter
Dave Jones
Dave Jones
Kejal Kantarci
Kejal Kantarci
Rob Reid
Rob Reid
Denise Reyes
Denise Reyes
Matt Senjem
Matt Senjem
Kaely Thostenson
Kaely Thostenson
Prashanthi Vemuri
Prashanthi Vemuri
Chad Ward
Chad Ward
Funded MRI Investigators
Funded MRI Investigators
Charlie DeCarli – UCD
Charlie DeCarli – UCD
Nick Fox – UCL
Nick Fox – UCL
Mike Weiner/
Mike Weiner/
Duygu Tosun
– SFVA
– SFVA
Paul Thompson – USC
Paul Thompson – USC
Danielle Harvey – biostats
Danielle Harvey – biostats
MR Company collaborators
MR Company collaborators
Dan Rettmann – GE Mayo
Dan Rettmann – GE Mayo
Pete Kollasch – Siemens, Mayo
Pete Kollasch – Siemens, Mayo
Yansong Zhao - Philips, BU
Yansong Zhao - Philips, BU
ADNI 3 protocol
ADNI 3 protocol
–
–
all sequences in all subjects
all sequences in all subjects
3D T1 volume
3D FLAIR
T2* GRE
ASL –3D, pCASL, background suppression
TF-fMRI – 2 tiered, use capability of advanced systems
Advanced - 10 minute, multi band, sub second TR
Basic – 10 minute, 3 sec TR
dMRI - 2 tiered, use capability of advanced systems
Advanced - 2 b-shells with 48/64 encoding directions
Basic – single shell b=1000
Coronal high res T2 – hippocampal subfields
ADNI 3 MRI protocol rationale
ADNI 3 MRI protocol rationale
3D T1, FLAIR, T2*GRE
3D T1, FLAIR, T2*GRE
3D T1 (MPRAGE, IR-FSPGR)
most precise longitudinal measure (biomarker or clinical/psych)
most precise longitudinal measure (biomarker or clinical/psych)
– core for multi modality comparisons
– core for multi modality comparisons
Associations with tau PET (and other measures)
Associations with tau PET (and other measures)
FLAIR
Disease detection – safety standard, clinical reads
Disease detection – safety standard, clinical reads
Associations of CVD with tau PET (and other measures)
Associations of CVD with tau PET (and other measures)
Possible improved results with 3D
Possible improved results with 3D
T2* GRE
MCB detection, all clinical trials
MCB detection, all clinical trials
ADNI 3 MRI protocol rationale
ADNI 3 MRI protocol rationale
ASL, dMRI, TF-fMRI
Promising associations, but not strong enough to
Promising associations, but not strong enough to
recommend including in trials using ADNI 2 methods
recommend including in trials using ADNI 2 methods
Significant developments since ADNI 2
Significant developments since ADNI 2
in other fields, improved methods = better diagnostic
in other fields, improved methods = better diagnostic
performance
performance
Opportunity to see if advanced methods cross the “value”
Opportunity to see if advanced methods cross the “value”
threshold for use in clinical trials
threshold for use in clinical trials
ADNI 3 MRI protocol rationale
ADNI 3 MRI protocol rationale
ASL, dMRI, TF-fMRI
field continues to seek methods which can be used in Phase
field continues to seek methods which can be used in Phase
2 which provide an early signal of treatment response
2 which provide an early signal of treatment response
measures of brain function may detect neuronal response to
measures of brain function may detect neuronal response to
therapeutic reduction in toxic molecular species (e.g. soluble
therapeutic reduction in toxic molecular species (e.g. soluble
Ab or tau)
Ab or tau)
2016 advanced is 2022 routine – do not want methods to be
2016 advanced is 2022 routine – do not want methods to be
outmoded by end of ADNI 3 grant cycle
outmoded by end of ADNI 3 grant cycle
Grantsmanship – novelty
Grantsmanship – novelty
Approach to “experimental sequences
Approach to “experimental sequences
” from ADNI 2 – leveraging the best in
” from ADNI 2 – leveraging the best in
class from other efforts
class from other efforts
dMRI and TF-MRI – human connectome
project (HCP)
ASL – ISMRM expert work group
Phantom – NIST/ISMRM QMRI committee
dMRI approach
dMRI approach
advanced, HCP-like – 2 shells, b=1000 & 2000
advanced, HCP-like – 2 shells, b=1000 & 2000
Better ROI-based MD, FA measures
Enable adding ROI-based kurtosis measures
Basic – single shell, b=1000
Basic – single shell, b=1000
Compatibility – equivalent of basic dMRI in every
Compatibility – equivalent of basic dMRI in every
subject at no time penalty
subject at no time penalty
extract b1000 shell from advanced acquisitions
extract b1000 shell from advanced acquisitions
Rooted in multi center real world trial environment
Rooted in multi center real world trial environment
Advanced (Multiband, Multishell
)
skyra
Basic
Basic
GE 750
Correcting EPI Distortion By Acquiring b =
Correcting EPI Distortion By Acquiring b =
0 volumes with both P->A and A->P Phase
0 volumes with both P->A and A->P Phase
Encoding Directions
Encoding Directions
Features of advanced dMRI sequence
Features of advanced dMRI sequence
*note requires 32 (64) array coil **NH = now w vendor assist
*note requires 32 (64) array coil **NH = now w vendor assist
TF-fMRI approach
TF-fMRI approach
advanced, HCP-like – 10 min, sub second TR, MB
More precise measure of time series (temporal resolution)
Less noisy node to node, ICA, graph theory measures
Directly measure physiological parameters
Time varying connectivity metrics
Basic – 10 minute, ~3 sec TR
Compatibly advanced and basic
down sample advanced time series to 1 volume/~3 sec
pseudo-continuous labeling with background suppression
pseudo-continuous labeling with background suppression
segmented three-dimensional readout without vascular crushing
segmented three-dimensional readout without vascular crushing
gradients
gradients
and calculation and presentation of both label/control difference
and calculation and presentation of both label/control difference
images and CBF maps
images and CBF maps
GE product now; Siemens d13; Philips
GE product now; Siemens d13; Philips
3D GraSE now testing
3D pCASL CBF map, volunteer, GE
3D pCASL CBF map, volunteer, GE
MR Phantom: ADNI Experience
MR Phantom: ADNI Experience
scanners are much more stable now vs 2005 –hence less
need to correct for scan to scan geometry fluctuation
use phantom to track scanners through upgrade and
maintenance cycles – qualification and re qualification
Phantoms are helpful for establishing comparability of
new models of scanners as the come along
ADNI Phantom
ADNI Phantom
Designed by ADNI MRI core along with Rich Mallozzi
(GE), Josh Levy(Phantom Labs) in 2004/2005
produced at Phantom Labs in upstate NY – Josh Levy
Priced in the range of $6k per unit
Freely available analysis package distributed via ADNI
website – Jeff Gunter (Mayo)
Commercial analysis available from ImageOwl (a
Phantom Labs partner)
NIST-ISMRM System Phantom
NIST-ISMRM System Phantom
ISMRM Standards and Quantitative MR committee has
developed a quantitative MRI phantom design
Provides similar geometric fidelity measurements to
ADNI phantom (that component strongly influenced
by ADNI phantom experience)
WITH resolution and slice thickness assessments
inspired by ACR-NEMA phantom
AND NIST validated T1, T2, PD arrays
NIST-ISMRM System Phantom
NIST-ISMRM System Phantom
ADNI phantom
NIST-ISMRM System Phantom
NIST-ISMRM System Phantom
“Open Source” philosophy – anybody welcome to
manufacture them
Currently only vendor has done it
more expensive than ADNI phantom – target price is
lower if production can be increased
Analysis software is currently immature (work in
progress) – will be open source
Plan for phantoms in ADNI 3
Plan for phantoms in ADNI 3
Use: to qualify and requalify scanners
But ADNI phantoms in field for 10yrs
Keep existing ADNI phantoms that are in the field until
they age out of use and need repair/replacement
Previous pharma studies have some ADNI phantoms in
storage at Mayo which could be folded into the ADNI
fleet as replacements needed
When that supply is exhausted, roll in NIST/ISMRM
phantom to replace ADNI phantoms?
Comparison testing this summer
MR measures -
MR measures -
Maintain current set of funded MR
Maintain current set of funded MR
investigators with roles adapted to ADNI 3
investigators with roles adapted to ADNI 3
Structural MRI measures
BSI – UCL (Fox)
Freesurfer – SFVA (Tosun )
TBM – USC (Thompson)
TBM-Syn – Mayo (‘Jack’)
Cerebrovascuar disease – UC Davis (DeCarli)
AIRA H (CMB) – Mayo (‘Jack’)
ASL – SFVA (Tosun)
TF-fMRI – Mayo (‘Jack’)
dMRI - USC (Thompson)
Hipp subfields – U Penn (Yuskevich) SFVA (Mueller)
Cutting-edge MRI protocols, ADNI 3, aim to enhance brain imaging techniques for clinical trials, focusing on precise measurements, disease detection, and potential treatment evaluation by leveraging advanced imaging methods like ASL, dMRI, and TF-fMRI.
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Presentation Transcript
MRI WWADNI 2015 Mayo Cliff Jack Bret Borowski Matt Bernstein Arvin Forghanian-Arani Jeff Gunter Dave Jones Kejal Kantarci Rob Reid Denise Reyes Matt Senjem Kaely Thostenson Prashanthi Vemuri Chad Ward Funded MRI Investigators Charlie DeCarli UCD Nick Fox UCL Mike Weiner/Duygu Tosun SFVA Paul Thompson USC Danielle Harvey biostats MR Company collaborators Dan Rettmann GE Mayo Pete Kollasch Siemens, Mayo Yansong Zhao - Philips, BU
ADNI 3 protocol all sequences in all subjects 3D T1 volume 3D FLAIR T2* GRE ASL 3D, pCASL, background suppression TF-fMRI 2 tiered, use capability of advanced systems Advanced - 10 minute, multi band, sub second TR Basic 10 minute, 3 sec TR dMRI - 2 tiered, use capability of advanced systems Advanced - 2 b-shells with 48/64 encoding directions Basic single shell b=1000 Coronal high res T2 hippocampal subfields
ADNI 3 MRI protocol rationale 3D T1, FLAIR, T2*GRE 3D T1 (MPRAGE, IR-FSPGR) most precise longitudinal measure (biomarker or clinical/psych) core for multi modality comparisons Associations with tau PET (and other measures) FLAIR Disease detection safety standard, clinical reads Associations of CVD with tau PET (and other measures) Possible improved results with 3D T2* GRE MCB detection, all clinical trials
ADNI 3 MRI protocol rationale ASL, dMRI, TF-fMRI Promising associations, but not strong enough to recommend including in trials using ADNI 2 methods Significant developments since ADNI 2 in other fields, improved methods = better diagnostic performance Opportunity to see if advanced methods cross the value threshold for use in clinical trials
ADNI 3 MRI protocol rationale ASL, dMRI, TF-fMRI field continues to seek methods which can be used in Phase 2 which provide an early signal of treatment response measures of brain function may detect neuronal response to therapeutic reduction in toxic molecular species (e.g. soluble Ab or tau) 2016 advanced is 2022 routine do not want methods to be outmoded by end of ADNI 3 grant cycle Grantsmanship novelty
Approach to experimental sequences from ADNI 2 leveraging the best in class from other efforts dMRI and TF-MRI human connectome project (HCP) ASL ISMRM expert work group Phantom NIST/ISMRM QMRI committee
dMRI approach advanced, HCP-like 2 shells, b=1000 & 2000 Better ROI-based MD, FA measures Enable adding ROI-based kurtosis measures Basic single shell, b=1000 Compatibility equivalent of basic dMRI in every subject at no time penalty extract b1000 shell from advanced acquisitions Rooted in multi center real world trial environment
Advanced (Multiband, Multishell) skyra Basic GE 750
Correcting EPI Distortion By Acquiring b = 0 volumes with both P->A and A->P Phase Encoding Directions
Features of advanced dMRI sequence *note requires 32 (64) array coil **NH = now w vendor assist feature Siemens GE Philips 32 array coil now 2016 now multi band d13 (WIP) 2016 WIP w 3/5 Multi b shells d13 WIP now Multi b0s NH now 5.x b0 spacing NH x 5.x Flip phase NH Use CV NH Grad dir contr NH NH 5.x
TF-fMRI approach advanced, HCP-like 10 min, sub second TR, MB More precise measure of time series (temporal resolution) Less noisy node to node, ICA, graph theory measures Directly measure physiological parameters Time varying connectivity metrics Basic 10 minute, ~3 sec TR Compatibly advanced and basic down sample advanced time series to 1 volume/~3 sec
pseudo-continuous labeling with background suppression segmented three-dimensional readout without vascular crushing gradients and calculation and presentation of both label/control difference images and CBF maps GE product now; Siemens d13; Philips 3D GraSE now testing
MR Phantom: ADNI Experience scanners are much more stable now vs 2005 hence less need to correct for scan to scan geometry fluctuation use phantom to track scanners through upgrade and maintenance cycles qualification and re qualification Phantoms are helpful for establishing comparability of new models of scanners as the come along
ADNI Phantom Designed by ADNI MRI core along with Rich Mallozzi (GE), Josh Levy(Phantom Labs) in 2004/2005 produced at Phantom Labs in upstate NY Josh Levy Priced in the range of $6k per unit Freely available analysis package distributed via ADNI website Jeff Gunter (Mayo) Commercial analysis available from ImageOwl (a Phantom Labs partner)
NIST-ISMRM System Phantom ISMRM Standards and Quantitative MR committee has developed a quantitative MRI phantom design Provides similar geometric fidelity measurements to ADNI phantom (that component strongly influenced by ADNI phantom experience) WITH resolution and slice thickness assessments inspired by ACR-NEMA phantom AND NIST validated T1, T2, PD arrays
NIST-ISMRM System Phantom ADNI phantom
NIST-ISMRM System Phantom Open Source philosophy anybody welcome to manufacture them Currently only vendor has done it more expensive than ADNI phantom target price is lower if production can be increased Analysis software is currently immature (work in progress) will be open source
Plan for phantoms in ADNI 3 Use: to qualify and requalify scanners But ADNI phantoms in field for 10yrs Keep existing ADNI phantoms that are in the field until they age out of use and need repair/replacement Previous pharma studies have some ADNI phantoms in storage at Mayo which could be folded into the ADNI fleet as replacements needed When that supply is exhausted, roll in NIST/ISMRM phantom to replace ADNI phantoms? Comparison testing this summer
MR measures - Maintain current set of funded MR investigators with roles adapted to ADNI 3 Structural MRI measures BSI UCL (Fox) Freesurfer SFVA (Tosun ) TBM USC (Thompson) TBM-Syn Mayo ( Jack ) Cerebrovascuar disease UC Davis (DeCarli) AIRA H (CMB) Mayo ( Jack ) ASL SFVA (Tosun) TF-fMRI Mayo ( Jack ) dMRI - USC (Thompson) Hipp subfields U Penn (Yuskevich) SFVA (Mueller)
