Explore the genomic inference of a severe human bottleneck during the Early to Middle Pleistocene transition, tracing the evolution of hominins over the last 4 million years, and studying essential events in the emergence of humans in the last one million years. Discover well-known human population

4 views • 33 slides

The genomic medicine field is advancing rapidly, with a focus on enhancing healthcare services through genomic testing for prediction, prevention, diagnosis, and precision medicine. The NHS is actively integrating genomics into its healthcare system, aiming for equitable access to genomic testing. I

1 views • 16 slides

Explore the intersection of statistical genomics, machine learning, and artificial intelligence through topics like knowledge mining, MMAP algorithm, cloud computing, and historical events such as Garry Kasparov vs IBM Deep Blue. Delve into the concepts of statistical learning methods, data predicti

7 views • 24 slides

In today's data-driven world, organizations rely on robust data engineering pipelines to collect, process, and analyze vast amounts of data efficiently. At the heart of these pipelines lies data wrangling, a critical process that involves cleaning, transforming, and preparing raw data for analysis.

2 views • 2 slides

Lujia Chen, a Postdoc Associate at the University of Pittsburgh, focuses on developing deep learning models for precision oncology. By utilizing machine learning, especially deep learning models, Chen aims to identify cancer signaling pathways, predict drug sensitivities, and personalize cancer trea

1 views • 5 slides

This case study evaluates a copy number variant (CNV) on chromosome 3q28 (190380498_191783134) associated with a loss of genetic material. The assessment includes genomic content analysis, gene involvement categorization, evaluation of established/predicted genes, and detailed scrutiny of the CCDC50

0 views • 16 slides

In this lab activity, students will learn how to isolate genomic DNA from arthropods and Wolbachia bacteria. The goal is to transition from fieldwork to molecular biology, utilizing DNA as a diagnostic tool. The activity involves extracting total genomic DNA from identified species and includes pre-

0 views • 11 slides

Exploratory Data Analysis (EDA) is a crucial approach for analyzing data by utilizing various techniques to extract insights, identify anomalies, and visualize trends. By leveraging EDA using tools like Pandas, researchers can improve their understanding of data variables, detect errors, and explore

1 views • 14 slides

The purpose of data analysis is to organize, structure, and derive meaning from research data. Qualitative analysis involves insight, creativity, and hard work. Researchers play a crucial role as instruments for data analysis, exploring and reflecting on interview discussions. Steps include transcri

1 views • 27 slides

This case involves a 2-month-old female with Tetralogy of Fallot, carrying a genetic variation in the 19p13.11 region. The evaluation process includes assessing genes, known dosage sensitivity, gene count, and detailed analysis of the duplication found in the DGV Gold Standard Dataset. The frequency

0 views • 17 slides

The report highlights current challenges and identified gaps in genetic and genomic testing for breast cancer risk assessment. The workgroup aims to catalog existing materials, address terminology confusion, and improve public and clinician education. Challenges include complex terminology, uncertai

0 views • 21 slides

This trial aims to compare the efficacy and safety of molecularly-guided therapy or cancer immunotherapy based on genomic profiling with platinum-based chemotherapy in patients with cancer of unknown primary site. The study design includes multiple treatment regimens guided by genomic profiles, with

4 views • 9 slides

Developed by Genomics Education Programme, these slides focus on the patient choice consent model for whole genome sequencing in NHS Genomic Medicine Service. The model aims to ensure informed choices for genomic testing, including participation in the National Genomic Research Library. It covers se

0 views • 34 slides

Explore Figures 1 through 5 depicting a novel method for identifying co-association networks of orthologs between species A and B. The analysis includes optimizing a cost function through simulated annealing, identifying cross-species modules, and assessing network modularity with respect to GO refe

1 views • 17 slides

This project proposal by Anthony Yang focuses on developing a Java program for data analysis and passage analysis. The motivation behind the project is to gain more knowledge in computer science and statistics-related topics while utilizing technology to extract useful insights from data. The propos

0 views • 8 slides

Explore the intricate details of cancer treatment through precision oncology, focusing on cell of origin, genomic changes, tumor microenvironment, host factors, and response to various treatments such as chemotherapy, biological therapy, and immune therapy. The natural history and histology-guided c

0 views • 9 slides

Explore the concept of ridge regression in genomic selection, involving the development of genomic selection methods, pioneers in implementation, fixed and random effects, and the over-fitting phenomenon. Learn how ridge regression addresses issues of over-fitting by introducing regularization param

0 views • 26 slides

Nucleotide Modifications Data Cards are vital primary research records that document raw data generated by SEA researchers. The checklist ensures accuracy and interpretability when analyzing restriction digest fragment patterns. Follow the instructions for obtaining genomic sequences and comparing v

0 views • 8 slides

Explore the capabilities of Galaxy, a web-based platform for computational biomedical research. Learn about aligning raw NGS data, peak calling, and basic operations with genomic intervals. Discover how Galaxy enables accessible, reproducible, and transparent analysis through user-friendly tools and

0 views • 19 slides

This research project led by Prof. Kazuo Ishii aims to develop a Big Data mining method and optimized algorithms for genomic Big Data, specifically targeting three major mental disorders including depression. The research process involves data analytics, mathematical modeling, and data processing te

0 views • 21 slides

Explore the architecture and usage of RepeatMasker for identifying and analyzing repetitive sequences in genomic data. Discover the sources of repeat sequence data, how RepeatMasker employs motifs for representation, and the utility of consensus and HMM models.

0 views • 24 slides

The study explores the intricate relationship between genetic and regulatory codes that shape protein evolution. Discusses how duons, genomic footprints, and transcription factors densely populate and constrain protein-coding exons. Highlights how regulatory elements influence codon choice independe

0 views • 21 slides

Trimming is a crucial procedure used to process raw sequencing data by removing errors such as low-quality bases and ambiguous nucleotides. This step is essential before downstream data analysis to ensure accurate results. Trimming involves setting quality thresholds to retain only high-confidence b

0 views • 10 slides

Explore the intricate world of gene regulation and genomic data analysis through a comprehensive study presented at a faculty workshop in 2014. Delve into the evolution and classification of biology, the impact of genome sequencing on digitizing biology, and the potential of genetic information vari

0 views • 18 slides

This toolkit provides essential resources for healthcare professionals involved in genomics services, covering topics such as genomic medicine, whole genome sequencing, clinical genetic testing methods, interpretation of DNA variants, and more. It also details the specific sample requirements for di

0 views • 24 slides

This detailed summary provides information on significant brain-related project datasets and consortia, including PsychENCODE, BrainSpan, CommonMind Consortium, AMP-AD Knowledge, and more. Each dataset or consortium focuses on specific areas such as genomics, neuropsychiatric diseases, neurodegenera

0 views • 18 slides

Understanding Association Analysis in IBM SPSS Modeler 14.2, also known as Affinity Analysis or Market Basket Analysis. Learn about identifying patterns in data without specific targets, exploring data mining in an unsupervised manner. Discover the uses of Association Rules, including insights into

0 views • 18 slides

Genomic selection in dairy cattle focuses on specialized breeds like Holstein, Jersey, Brown Swiss, and Ayrshire. It brings reliable breeding values at a young age, higher success rates in obtaining top bulls, and lower costs for test proofs, leading to a shorter generation interval. While it offers

0 views • 12 slides

This study discusses the inclusion of feed intake data from U.S. Holsteins in genomic prediction, focusing on residual feed intake (RFI) as a new trait. The research involves data from research herds and genotypes of cows, with genetic evaluation models and genomic evaluation for predicting feed int

0 views • 17 slides

This document outlines a genomic imputation pipeline for multiple GWAS studies using reference panels such as 1000 Genomes Phase I data. It covers steps like data matching, phasing, and imputation using tools like Beagle and Minimac. The expected output includes imputed dosages and quality measures.

0 views • 6 slides

Clinical assessment was conducted on a 4-month-old male with bilateral microphthalmia due to a genomic deletion in the 13q12.11 region. The deletion encompasses part of a protein-coding gene and has been associated with various birth defects and developmental delays in previous cases. Detailed evalu

0 views • 13 slides

BED (Browser Extensible Data) files are commonly used for annotating genomic sequences by specifying ranges on chromosomes. They consist of required fields like chromosome name, start and end positions, and optional fields for additional information such as name, score, strand, and color representat

0 views • 11 slides

Explore the application of genomic recursions in single-step genomic best linear unbiased predictor (BLUP) for genetic evaluations in animal breeding. Understand the significance of using genomic data to improve genetic selection, increase accuracy, shorten generation intervals, and enhance genetic

0 views • 31 slides

The Mainstreaming Genomic Medicine post provides insights into the background and progress of the 100,000 Genomes Project, including details on genetic vs. genomic testing, the setup of NHS Genomic Medicine Centres, types of cancer included, and samples taken. It covers the project's inception, key

0 views • 19 slides

Obtain valuable insights into retrieving genome files for bioinformatics analysis utilizing multiple methods such as connecting via Finder, using Filezilla for FTP access, and executing curl commands on Xanadu. Learn how to access coding sequences, feature tables, nucleotide sequences, and encoded p

0 views • 38 slides

Explore concepts of statistical genomics in Lecture 11 focusing on power, type I error, and false discovery rate (FDR) in GWAS analysis. The content covers simulations of phenotype from genotype data, GWAS by correlation, resolution and bin approach, and implications on QTN bins for power and error

0 views • 21 slides

Explore the world of Next-Generation Sequencing (NGS) applications in bioinformatics, covering topics such as RNA sequencing, big data challenges, storing genomic datasets, querying genetic information, and data visualization. Dive into the complexities of sequencing technologies, gene expression co

0 views • 41 slides

This genetic case study involves a 10-year-old female with a de novo 17p13.3 deletion, presenting with mild intellectual disability and growth delay. The deletion overlaps with the Miller-Dieker syndrome critical region, impacting genes associated with lissencephaly and cognitive impairment. Through

0 views • 19 slides

Mainstreaming in healthcare involves shifting genomic testing from Clinical Genetics to various specialties, such as cancer MDTs. This process impacts consent for genetic testing and result communication. NDRS data analyzes the time to diagnosis, while training and resources focus on why mainstreami

0 views • 7 slides

In the realm of bioinformatics, the creation of Model Organism Databases (MODs) plays a crucial role in advancing genomic research and understanding the complexities of various organisms. MODs facilitate pathway analyses, omics data analysis, and the development of metabolic models, serving as valua

0 views • 17 slides