The HoloRuminant Project - Advancing Dairy Research and Innovation

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The HoloRuminant Project, led by Joana Lima Dairy Research Centre, aims to characterize ruminant-associated microbiomes, define microbiome establishment and maintenance, and evaluate their influence on animal production, health, and welfare. This EU-funded initiative focuses on consolidating knowledge, exploring microbiome colonization and consequences, promoting sustainable production, optimizing performance through integration, and engaging with stakeholders for socio-economic impact.


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  1. The HoloRuminant Project Joana Lima Dairy Research Centre & Digital Dairy Chain introductions event 14thFebruary 2023 This project has received funding from the European Union s Horizon 2020 research and innovation programme under grant agreement No 101000213

  2. Concepts Microbiome concept Holobiont concept Main objectives Characterise ruminant-associated microbiomes Define microbiome establishment and maintenance Evaluate influence of microbiomes on animal production, health and welfare traits This project has received funding from the European Union s Horizon 2020 research and innovation programme under grant agreement No 101000213

  3. WP1 Consolidation of existing and development of novel knowledge on ruminant microbiomes WP2 Colonisation, persistence and consequences of ruminant microbiomes. SRUC SRUC WP3 Ruminant microbiomes and sustainable production. WP4 Integrating microbiomes for improving ruminant performance. WP5 Innovation, socio-economic impact and stakeholder engagement. WP6 Communication and dissemination. WP7 Coordination and project management. This project has received funding from the European Union s Horizon 2020 research and innovation programme under grant agreement No 101000213

  4. WP2 - Colonisation, persistence and consequences of ruminant microbiomes Wisconsin score Lung ultrasound Maternal Mouth, nose, faecal, skin 2 weeks post weaning rumen fluid, faecal Weaning mouth, nose, faecal, skin, rumen fluid Maternal Vaginal New born mouth, nose, faecal, hoof, colostrum 3 weeks old mouth, nose, faecal, hoof 1 week old mouth, nose, faecal, hoof Time This project has received funding from the European Union s Horizon 2020 research and innovation programme under grant agreement No 101000213

  5. WP2 - Colonisation, persistence and consequences of ruminant microbiomes Mastitis Lameness 8 months old rumen fluid, faecal, nose, skin Before mating rumen fluid, skin Before calving rumen fluid, skin 100 days in milk rumen fluid, skin, milk 30 days in milk rumen fluid, skin, milk Time This project has received funding from the European Union s Horizon 2020 research and innovation programme under grant agreement No 101000213

  6. WP3 Ruminant microbiomes and sustainable production. Mastitis-focused. Sampling of healthy animal s milk at 5 DIM. Sampling at subclinical. Sampling milk from clinical cases. This project has received funding from the European Union s Horizon 2020 research and innovation programme under grant agreement No 101000213

  7. HoloRuminant PARTNERS Thank you for your attention www.holoruminant.eu This project has received funding from the European Union s Horizon 2020 research and innovation programme under grant agreement No 101000213

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