Infrared Spectroscopy: From Molecules to Energy Absorption

The Electromagnetic Spectrum
 
Ionizing
Bond Breaking
 
Electronic
 
Vibrational
 
Rotation
 
NMR
MRI
 
You’ll often see this plot flipped, left to right
Oregon State University Department of Chemistry, Sleszynski, CH362, IR Lecture
Slide 1
 
High Energy
 
Low Energy
 
Visible
 
“wavenumbers” = 1/
λ
  cm
-1
 
High Energy
 
Low Energy
 
Tissue is translucent
 
Bond Distance and Vibrational Energy
Standard Bonding Representation
Slide 2
 
1 / 
λ
 (cm
-1
)
 
Quantized!
ν
 = 1/(2
π
) 
k/m
ν
 : frequency
k
: force constant (measure of bond stiffness)
 
single < double < triple
m: reduced mass – m
1
m
2
/m
1
+m
2
 
~Harmonic oscillator math
Vibrational energy 
 IR photons
@ absolute zero all motion stops
 
Vibrational
quantum levels
 
Why start with a gas phase IR spectra???
Oregon State University Department of Chemistry, Sleszynski, CH362, IR Lecture
Why P-Chemists Use the Gas Phase:
Ideal Gas Law Assumptions
Slide 3
Oregon State University Department of Chemistry, Sleszynski, CH362, IR Lecture
 
In the gas phase molecules do not interact (assumption)
 
pure individual molecular vibrations
In the liquid phase molecules are touching
 
molecular vibrations are modified 
(change in energy)
 by interactions
 
with neighboring molecules
In water the highest energy intermolecular interaction is????
 
H-O
 
Hydrogen bonded
H-O
What Determines Which Molecules
Absorb Infrared Energy?
 
H
2
, N
2
, O
2
 do not absorb infrared energy
 
And CO
2
, H
2
O and CH
4
 all absorb IR?
 
Why?
 
Absorbing an IR photon must change the atomic positions in a way that
results in a change in the molecular dipole moment
 
 H
2
, N
2
, O
2
 
cannot
 have a dipole
 
Water does ….
Slide 4
 
Stretching
 symmetric
 
Stretching
asymmetric
 
Bending
In-plane
scissoring
Oregon State University Department of Chemistry, Sleszynski, CH362, IR Lecture
 
Twisting
 
Rocking 1
 
Rocking 2
 
All greenhouse gases!!
 
Or simultaneous combinations of the above
 
IR Assignment Rules
Actually More Guidelines Than Rules
Slide 5
Oregon State University Department of Chemistry, Sleszynski, CH362, IR Lecture
http://opening.download/spring-opening.html
 
High Energy
Low Energy
Single Beam IR with No
Background Subtraction
Slide 6
Oregon State University Department of Chemistry, Sleszynski, CH362, IR Lecture
CO
2
 gas
H
2
O vapor
H
2
O vapor
Source and detector
variation with wavelength
A Series of Benzene Derivative
IR Spectra
Slide 7
Oregon State University Department of Chemistry, Sleszynski, CH362, IR Lecture
 
H-O
 
C=O
 
=C-H
 
=C-H
 
>3000
=C-H
 
H-O
 
-C-H
<3000
 
-C-H
 
C=C
 
C=C
 
C=C
 
C=O
Building a Spectrophotometer
 
In the UV/Visible region wavelength selection is
accomplished with a monochrometer
 
And then came the Michelson Interferometer ……
 
The original “dispersive” IRs had a reasonable similar design
Slide 8
Oregon State University Department of Chemistry, Sleszynski, CH362, IR Lecture
A Michelson Interferometer Uses
Constructive/Destructive Interference
Slide 9
https://www.mpoweruk.com/figs/Michelson-Interferometer.htm
 
 
Constructive
interference
 
Destructive
interference
d
1
d
2
 
d
1
 = d
2
 
d
1
 = d
2 
- ½ 
λ
 
What happens if we start moving one of
the mirrors?
 
The frequency (cycles/s) of the switch between constructive/destructive
 
= mirror velocity * 1/
λ
The
 Laser Interferometer Gravitational-Wave Observatory
 (
LIGO
) uses an
interferometer that is 4 kilometers long to detect gravitational waves
Oregon State University Department of Chemistry, Sleszynski, CH362, IR Lecture
The Interferogram:
All Wavelengths Simultaneously
Slide 10
https://www.newport.com/n/introduction-to-ftir-spectroscopy
 
Each wavelength alternates between
constructive & destructive interference
 
But in a different time sequence
 
An Interferogram is the result
Oregon State University Department of Chemistry, Sleszynski, CH362, IR Lecture
Interferogram is Time Domain
Spectra is Frequency Domain
Slide 11
https://www.newport.com/n/introduction-to-ftir-
spectroscopy
 
How do we get from an Interferogram in the time domain
To a spectra in the frequency domain?
Fourier transform math
 
f(frequency) = f(time)
Oregon State University Department of Chemistry, Sleszynski, CH362, IR Lecture
 
 
IR Sources are “Planck Black Body Radiators”
Slide 12
Oregon State University Department of Chemistry, Sleszynski, CH362, IR Lecture
Do not all fix’d Bodies, when heated beyond a certain degree, emit
Light and shine; and is not this Emission perform’d by the vibrating
motion of its parts?
 
Without thinking, which is hotter?
Red hot or white hot?
What temperature range would give us
photons in the mid-IR range?
Nernst Glower: heated rare earth oxide ~1500 K
 
Spectra output 1-50 um
 
Globar: heated silicon carbide ~1500 K
 
Spectra output 1-50 um
 
Isaac Newton,  
Opticks
,  published 1704.
IR Detectors
Slide 13
Oregon State University Department of Chemistry, Sleszynski, CH362, IR Lecture
“Pyroelectric” detectors –
deuterated triglycine sulfate
detector (DTGS) - work
based on temperature
differences
 
Visible photons are energetic and in semi-
conductors will kick electrons out of valence bands
and into conduction bands, producing a current
 
Mercury Cadmium Telluride
(MCT) is an IR photon sensitive
semiconductor which must be
liquid N
2
 cooled
 
D* is a measure
of sensitivity
Refractive Index
Slide 14
Oregon State University Department of Chemistry, Sleszynski, CH362, IR Lecture
 
The speed of light a constant 3.00 x 10
8
 m/s
 
Slower in denser material
 
n
1
 > n
2
 
vacuum n = 1
water n = 1.33
 
 
in a vacuum
 
Refractive index is related to density
Refractometry and Instrument Design
Slide 15
Oregon State University Department of Chemistry, Sleszynski, CH362, IR Lecture
 
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Delve into the world of infrared spectroscopy, exploring the electromagnetic spectrum, vibrational energy, and molecular interactions in the gas and liquid phases. Discover why certain molecules absorb infrared energy while others don't, and learn about the significance of greenhouse gases in trapping heat. Gain insights into the rules and guidelines for interpreting IR spectra, making peak assignments, and identifying functional groups.

  • Infrared Spectroscopy
  • Vibrational Energy
  • Molecules
  • Gas Phase
  • Greenhouse Gases

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  1. The Electromagnetic Spectrum You ll often see this plot flipped, left to right High Energy Low Energy Visible NMR MRI Vibrational Electronic Rotation Ionizing Bond Breaking Photon e- High Energy Low Energy Visible near-IR mid-IR Tissue is translucent 20,000 nm 500 cm-1 2500 nm 4000 cm-1 350 nm 650 nm wavenumbers = 1/ cm-1 Oregon State University Department of Chemistry, Sleszynski, CH362, IR Lecture Slide 1

  2. Bond Distance and Vibrational Energy Standard Bonding Representation Cl H Cl H ~Harmonic oscillator math Vibrational energy IR photons @ absolute zero all motion stops H Cl Cl H Cl H pos Energy Infrared spectrum of HCl gas neg 0 Distance Vibrational quantum levels Bond energy Bond distance 17 17 Cl Cl vs 35 37 Quantized! = 1/(2 ) k/m : frequency k: force constant (measure of bond stiffness) single < double < triple m: reduced mass m1m2/m1+m2 1 / (cm-1) https://www.azom.com/article.aspx?ArticleID=15226 Why start with a gas phase IR spectra??? Oregon State University Department of Chemistry, Sleszynski, CH362, IR Lecture Slide 2

  3. Why P-Chemists Use the Gas Phase: Ideal Gas Law Assumptions H2O gas phase H2O liquid phase Hydrogen bonded H-O H-O In the gas phase molecules do not interact (assumption) pure individual molecular vibrations In the liquid phase molecules are touching molecular vibrations are modified (change in energy) by interactions with neighboring molecules In water the highest energy intermolecular interaction is???? Oregon State University Department of Chemistry, Sleszynski, CH362, IR Lecture Slide 3

  4. What Determines Which Molecules Absorb Infrared Energy? H2, N2, O2 do not absorb infrared energy And CO2, H2O and CH4 all absorb IR? Why? All greenhouse gases!! Absorbing an IR photon must change the atomic positions in a way that results in a change in the molecular dipole moment H2, N2, O2cannot have a dipole Water does . H H H H H H O Rocking 1 O Bending In-plane scissoring O Stretching symmetric H H H H H H O Rocking 2 O Twisting O Stretching asymmetric Or simultaneous combinations of the above Oregon State University Department of Chemistry, Sleszynski, CH362, IR Lecture Slide 4

  5. IR Assignment Rules Actually More Guidelines Than Rules Fingerprint region difficult to make individual peak assignments but useful if you have a reference spectra for comparison Group Region useful for identifying functional groups C C C N High Energy Low Energy http://opening.download/spring-opening.html Oregon State University Department of Chemistry, Sleszynski, CH362, IR Lecture Slide 5

  6. Single Beam IR with No Background Subtraction Source and detector variation with wavelength H2O vapor H2O vapor CO2 gas Oregon State University Department of Chemistry, Sleszynski, CH362, IR Lecture Slide 6

  7. A Series of Benzene Derivative IR Spectra H-O =C-H C=C C=C -C-H <3000 >3000 =C-H -C-H H-O C=O =C-H C=O C=C Oregon State University Department of Chemistry, Sleszynski, CH362, IR Lecture Slide 7

  8. Building a Spectrophotometer In the UV/Visible region wavelength selection is accomplished with a monochrometer Sample Cuvette Monochromator Broad Band White Light Source Dispersed Into Discreet Wavelengths Slit Isolates Desired Wavelength Photomultiplier (PMT) or Silicon Photodiode Detector The original dispersive IRs had a reasonable similar design And then came the Michelson Interferometer Oregon State University Department of Chemistry, Sleszynski, CH362, IR Lecture Slide 8

  9. A Michelson Interferometer Uses Constructive/Destructive Interference d1 = d2 Constructive interference d1 What happens if we start moving one of the mirrors? d2 d1 = d2 - Destructive interference Shift wavelength https://www.mpoweruk.com/figs/Michelson-Interferometer.htm The frequency (cycles/s) of the switch between constructive/destructive = mirror velocity * 1/ The Laser Interferometer Gravitational-Wave Observatory (LIGO) uses an interferometer that is 4 kilometers long to detect gravitational waves Oregon State University Department of Chemistry, Sleszynski, CH362, IR Lecture Slide 9

  10. The Interferogram: All Wavelengths Simultaneously Each wavelength alternates between constructive & destructive interference 2.5 1 2 1.5 1 But in a different time sequence 0.5 0 0 10 20 30 40 50 An Interferogram is the result 2.5 1 & 2 2 1.5 1 0.5 0 0 10 20 30 40 50 What the detector sees 1 + 2 5 4 3 2 1 0 0 10 20 30 40 50 https://www.newport.com/n/introduction-to-ftir-spectroscopy Oregon State University Department of Chemistry, Sleszynski, CH362, IR Lecture Slide 10

  11. Interferogram is Time Domain Spectra is Frequency Domain https://www.newport.com/n/introduction-to-ftir- spectroscopy How do we get from an Interferogram in the time domain To a spectra in the frequency domain? Fourier transform math f(frequency) = f(time) + i2 t f( ) = f(t)e dt - Oregon State University Department of Chemistry, Sleszynski, CH362, IR Lecture Slide 11

  12. Do not all fixd Bodies, when heated beyond a certain degree, emit Light and shine; and is not this Emission perform d by the vibrating motion of its parts? Isaac Newton, Opticks, published 1704. IR Sources are Planck Black Body Radiators Without thinking, which is hotter? Red hot or white hot? What temperature range would give us photons in the mid-IR range? Nernst Glower: heated rare earth oxide ~1500 K Spectra output 1-50 um Globar: heated silicon carbide ~1500 K Spectra output 1-50 um Oregon State University Department of Chemistry, Sleszynski, CH362, IR Lecture Slide 12

  13. IR Detectors Visible photons are energetic and in semi- conductors will kick electrons out of valence bands and into conduction bands, producing a current Mercury Cadmium Telluride (MCT) is an IR photon sensitive semiconductor which must be liquid N2 cooled Pyroelectric detectors deuterated triglycine sulfate detector (DTGS) - work based on temperature differences D* is a measure of sensitivity Oregon State University Department of Chemistry, Sleszynski, CH362, IR Lecture Slide 13

  14. Refractive Index The speed of light a constant 3.00 x 108 m/s Slower in denser material Refractive index n = c = speed in a vacuum v speed in media in a vacuum vacuum n = 1 water n = 1.33 n1 > n2 n2 2 Critical Angle 2 Snell s Law n1 = sin 2 n2 sin 1 n1 1 Fiber optics 1 1 Refractive index is related to density Concentration 10% Glucose solution in water 20% Glucose solution in water 60% Glucose solution in water Index 1.3477 1.3635 1.4394 Oregon State University Department of Chemistry, Sleszynski, CH362, IR Lecture Slide 14

  15. Refractometry and Instrument Design Visible http://www.refractometer.pl/Abbe-refractometer Oregon State University Department of Chemistry, Sleszynski, CH362, IR Lecture Slide 15

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