Bayesian Methods for Probability Estimation

First, a question
Can we find the perfect value for a coefficient?
Bayesian Methods
Allow updating an existing probability
when additional information is made
available
Allows flexibility when integrating
different types of “data” to create
probabilities
Growing in popularity to solve real
problems
Provides a method to “update beliefs”
Argued to be closer to how we think
Bayes' Theorem
Example: Landslides
P(A|B): Probability of a landslide given that it is raining
Unknown
P(A): Probability of a landslide
Number of days with landslides per year / 365
P(B): Probability of rain
Number of days with rain per year / 365
P(B|A): Probability of rain given a landslide
Number of days it has rained and had a landslide divided by
the number of days with landslides
Definition
Bayesian Modeling
Posterior
Distribution
Prior
Distribution
Likelihood
Data
Priors
Informative prior – A prior that is based on data
Uninformative prior – “objective” prior
Principle of indifference: when in doubt, assign equal
probabilities to all outcomes
Posterior
Distribution
Prior
Distribution
Likelihood
Data
Bayesian vs. Frequentists
Bayesian Continued…
Hierarchical Bayes
Bayesian equations used to predict coefficients in other
equations in levels
Bayesian networks
Networks of equations/distributions
Bayesian Networks
https://towardsdatascience.com/introduction-to-bayesian-networks-81031eeed94e
Spatial Bayesian
Effects of land use changes on ecosystem processes, carbon storage and climate change mitigation
Martin Herold, M. García Esteban, Alvaro Ivan Lau Sarmiento, Alvaro Ivan Lau etc.
Tools
WinBUGS – original Bayesian modeling package (worst
UI ever!)
GeoBUGS
 – Spatial Bayes?
Laplace's Demon 
- a "complete environment for
Bayesian inference", their web site also has some very
nice introductory material (and some nice
merchandise!).
R Packages for Bayes
 – more on this…
R for Bayes
R2WinBUGS – interface to WinBUGS
JAGS – Designed to work with R
rjags – interface to JAGS
coda – library to analyze MCMC results
Stan – faster and larger models
Rstan – R library
INLA?
Resources
R and Bayesian Statistics
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Bayesian methods facilitate updating probabilities based on new information, allowing integration of diverse data types. Bayes' Theorem forms the basis, with examples like landslide prediction illustrating its application. Prior and posterior probabilities, likelihood, and Bayesian modeling concepts are explained, along with a comparison to frequentist methods.

  • Bayesian Methods
  • Probability Estimation
  • Bayes Theorem
  • Prior Probability
  • Posterior Probability

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  1. First, a question Can we find the perfect value for a coefficient? namNm15

  2. Bayesian Methods Allow updating an existing probability when additional information is made available Allows flexibility when integrating different types of data to create probabilities Growing in popularity to solve real problems Provides a method to update beliefs Argued to be closer to how we think namNm15

  3. Bayes' Theorem ? ? ? =?(?|?) ?(?) ?(?) The probability of A, given B, is the probability of B, given A, times the probability of A divided by the probability of B. Thomas Bayes first suggested using this equation to update existing probabilities namNm15

  4. Example: Landslides P(A|B): Probability of a landslide given that it is raining Unknown P(A): Probability of a landslide Number of days with landslides per year / 365 P(B): Probability of rain Number of days with rain per year / 365 P(B|A): Probability of rain given a landslide Number of days it has rained and had a landslide divided by the number of days with landslides namNm15

  5. Definition ? ? ? =?(?|?) ?(?) ?(?) P(A|B) posterior probability P(A) prior probability, probability of A before B is observed P(B|A) probability of observing B given A. P(B) probability of B namNm15

  6. Bayesian Modeling Likelihood ? ? ? =?(?|?) ?(?)?(?) Posterior Distribution Prior Data Distribution namNm15

  7. Priors Informative prior A prior that is based on data Uninformative prior objective prior Principle of indifference: when in doubt, assign equal probabilities to all outcomes Likelihood ? ? ? =?(?|?) ?(?)?(?) namNm15 Posterior Distribution Prior Data Distribution

  8. Bayesian vs. Frequentists namNm15

  9. Bayesian Continued Hierarchical Bayes Bayesian equations used to predict coefficients in other equations in levels Bayesian networks Networks of equations/distributions namNm15

  10. Bayesian Networks namNm15 https://towardsdatascience.com/introduction-to-bayesian-networks-81031eeed94e

  11. Spatial Bayesian namNm15 Effects of land use changes on ecosystem processes, carbon storage and climate change mitigation Martin Herold, M. Garc a Esteban, Alvaro Ivan Lau Sarmiento, Alvaro Ivan Lau etc.

  12. Tools WinBUGS original Bayesian modeling package (worst UI ever!) GeoBUGS Spatial Bayes? Laplace's Demon - a "complete environment for Bayesian inference", their web site also has some very nice introductory material (and some nice merchandise!). R Packages for Bayes more on this namNm15

  13. R for Bayes R2WinBUGS interface to WinBUGS JAGS Designed to work with R rjags interface to JAGS coda library to analyze MCMC results Stan faster and larger models Rstan R library INLA? Resources R and Bayesian Statistics namNm15

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