Interactive Plotting with ggplot and Shiny: Enhancing Galaxy Visualization Tools
Explore the concept of transforming existing ggplot2 Galaxy tools into interactive platforms using Shiny or Plotly implementations. Discover a variety of plot types available with ggplot2, such as barplots, violin plots, PCA plots, and heatmaps. Utilize additional plot options through various geom_* functions for enhanced visualization capabilities. Enhance existing Galaxy apps with interactive features to create a more dynamic and user-friendly data visualization environment. Experiment with RStudio demos and outlooks for potential future integrations with Plotly and Shiny apps in Galaxy for more useful and robust plotting options.
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Presentation Transcript
Interactive plotting with ggplot and shiny in Galaxy by Jochen Bick
The idea change existing ggplot2 galaxy tools and make them interactive use shiny and/or plotly for the implementation add more plots available with ggplot2 barplot violine PCA heatmap ...
more plot types there are many more options for plots with geom_* available. not all of them are frequently used http://sape.inf.usi.ch/quick-reference/ggplot2/geom
DEMO with RStudio adapted from: https://github.com/JoachimGoedhart/PlotsOfData
Outlook use features from plot.ly connect shiny app with Galaxy add more plot option to provide useful plots https://plot.ly/
