Enhancing Research Data Stewardship for Craniofacial and Dental Studies
2020 FACEBASE USERS BOOTCAMP
Cris Williams, Robert Schuler, Alejandro Bugacov
FaceBase Hub
November 18, 2020
Agenda
•
Welcome and Introductions
•
Walkthrough of facebase.org
•
Detailed tour of the Data Browser and how to find data
–
How data is organized
–
How to filter through data
–
How to share and cite
•
Exporting data
•
Brief overview of how to submit data
•
Requesting access to human data
•
Question and Answer
An Open Platform for Craniofacial and Dental Research
Comprehensive resource
on dental and craniofacial
research -- fostering data
sharing and curated
resources.
Transitioned from a “hub and spoke” consortium to a
community-wide effort in 2019.
Comprised of a core
team of craniofacial and
computer science
expertise w/ advisory
and experts groups for
oversight.
Growing, Multi-faceted Digital Repository
942 Datasets and growing
•
820 mouse, 82 human, 39
zebrafish, 3 other
•
634 imaging, 143 sequencing,
and other experiment types
•
800+ detailed experiment records
•
3,500~ detailed biosample records
•
5,000+ images, 3,700+ sequencing, 2,270+
tracks, and more (~10 TB)
12 Month Usage
•
16,000+ visitors,
63,900~ views
•
2,000+ downloads
•
7,400+ image views
•
77,000+ track reads
13 new projects
contributing data from
FB3:Y1
Serves a worldwide community:
50% US + 50% International (traffic)
Mission to Improve the Stewardship of Research Data
Science is dependent on generating
and analyzing data, but…
•
80% of time spent on accessing,
cleaning, integrating data
•
Scarcity of data sharing
•
10% reproducibility of data
•
Recent high-profile retractions in
COVID-19 research, for example.
F
indable
A
ccessible
I
nteroperable
R
eusable Data
•
Organization
of data files to
understand what and how they
were produced
•
Terminology
from community
standards with broad acceptance
•
Description
of the experimental
methods and biological materials
•
Protocols
that are enumerated or
referenced for precise details
This Photo
by Unknown Author is licensed under
CC BY-SA-NC
Goals for this talk:
1. Increase your awareness of FaceBase and its resources to aid you in your research
2. Invite you to consider sharing/contributing your research data through FaceBase
Explore the comprehensive resources provided by the FaceBase platform for craniofacial and dental research, featuring detailed tours, data organization insights, and a collaborative framework. Learn how the platform facilitates data sharing, boosts reproducibility, and supports a global research community. With a growing digital repository and a mission to improve data stewardship, FaceBase is dedicated to enhancing the accessibility and reuse of valuable research data.
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Presentation Transcript
2020 FACEBASE USERS BOOTCAMP Cris Williams, Robert Schuler, Alejandro Bugacov FaceBase Hub November 18, 2020
Agenda Welcome and Introductions Walkthrough of facebase.org Detailed tour of the Data Browser and how to find data How data is organized How to filter through data How to share and cite Exporting data Brief overview of how to submit data Requesting access to human data Question and Answer
An Open Platform for Craniofacial and Dental Research Comprised of a core team of craniofacial and computer science expertise w/ advisory and experts groups for Comprehensive resource on dental and craniofacial research -- fostering data sharing and curated resources. Biological Expertise Scientific Advisory Group Craniofacial Researchers FaceBase 3 oversight. Data Development & Operations Data Integration & Management Coordinating Center Internal Working Groups NIDCR Staff Coordination & Collaboration Transitioned from a hub and spoke consortium to a community-wide effort in 2019.
Growing, Multi-faceted Digital Repository 942 Datasets and growing 820 mouse, 82 human, 39 zebrafish, 3 other 634 imaging, 143 sequencing, and other experiment types 800+ detailed experiment records 3,500~ detailed biosample records 5,000+ images, 3,700+ sequencing, 2,270+ tracks, and more (~10 TB) 12 Month Usage 16,000+ visitors, 63,900~ views 2,000+ downloads 7,400+ image views 77,000+ track reads 13 new projects contributing data from FB3:Y1 Serves a worldwide community: 50% US + 50% International (traffic)
Mission to Improve the Stewardship of Research Data Science is dependent on generating and analyzing data, but 80% of time spent on accessing, cleaning, integrating data Scarcity of data sharing 10% reproducibility of data Recent high-profile retractions in COVID-19 research, for example.
Findable Accessible Interoperable Reusable Data Organization of data files to understand what and how they were produced Terminology from community standards with broad acceptance Description of the experimental methods and biological materials Protocols that are enumerated or referenced for precise details
