Dockers and AMI
Dockers and AMI
Bioconductor User Resources
Dockers
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https://bioconductor.org/help/docker/
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https://hub.docker.com/r/bioconductor/
Maintained by Steffen Neumann: sneumann@ipb-halle.de
Maintained as part of the “PhenoMeNal, funded by Horizon2020 grant 654241”
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bioconductor/devel_base2
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bioconductor/devel_core2
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bioconductor/release_base2
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bioconductor/release_core2
Maintained by the Bioconductor Core Team: bioc-issue-bot@bioconductor.org
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bioconductor/devel_protmetcore2
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bioconductor/devel_metabolomics2
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bioconductor/release_protmetcore2
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bioconductor/release_metabolomics2
Maintained by Laurent Gatto: lg390@cam.ac.uk
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bioconductor/devel_mscore2
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bioconductor/devel_protcore2
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bioconductor/devel_proteomics2
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bioconductor/release_mscore2
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bioconductor/release_protcore2
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bioconductor/release_proteomics2
docker pull bioconductor/release_base2:R3.3.3_Bioc3.4
Example:
AMI
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https://bioconductor.org/help/bioconductor-cloud-ami/
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https://aws.amazon.com/console/
Lori Shepherd
lori.shepherd@roswellpark.org
Dockers and Amazon Machine Image (AMI) are essential resources for Bioconductor users. The Bioconductor Core Team, including contributors like Steffen Neumann and Laurent Gatto, maintain various Bioconductor packages and resources. Learn to utilize Docker images and AMIs provided by Bioconductor for your data analysis needs. Explore example commands for pulling Bioconductor images and leveraging cloud-based AMIs for Bioconductor-related work. Connect with Lori Shepherd for further inquiries.
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Presentation Transcript
Dockers and AMI Bioconductor User Resources
Dockers https://bioconductor.org/help/docker/ https://hub.docker.com/r/bioconductor/
Maintained by the Bioconductor Core Team: bioc-issue-bot@bioconductor.org bioconductor/devel_base2 bioconductor/release_base2 bioconductor/devel_core2 bioconductor/release_core2 Maintained by Steffen Neumann: sneumann@ipb-halle.de Maintained as part of the PhenoMeNal, funded by Horizon2020 grant 654241 bioconductor/release_protmetcore2 bioconductor/release_metabolomics2 bioconductor/devel_protmetcore2 bioconductor/devel_metabolomics2 Maintained by Laurent Gatto: lg390@cam.ac.uk bioconductor/devel_mscore2 bioconductor/devel_protcore2 bioconductor/devel_proteomics2 bioconductor/release_mscore2 bioconductor/release_protcore2 bioconductor/release_proteomics2
Example: docker pull bioconductor/release_base2:R3.3.3_Bioc3.4
AMI https://bioconductor.org/help/bioconductor-cloud-ami/ https://aws.amazon.com/console/
Lori Shepherd lori.shepherd@roswellpark.org
