Comprehensive Online Tutorial for Component Databases Management

 
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Evgeny Lavrik
 
2.11.2020
 
1
 
E. Lavrik - Component databases online tutorial
 
2.11.2020
 
E. Lavrik - Component databases online tutorial
 
2
 
 
•
Refer to the presentation at collaboration meeting
https://indico.gsi.de/event/10062/contributions/48478/
•
http://compdb.cbm.gsi.de
 is our central component database server,
accessible from everywhere, you can host your data there too!
 
•
Documentation: 
https://git.cbm.gsi.de/TGenBase/ClassGen
•
We have a mailing list 
CBM-COMPONENTDB@gsi.de
•
Email me 
e.lavrik@gsi.de
 
Where to find info and help?
 
2.11.2020
 
E. Lavrik - Component databases online tutorial
 
3
 
 
•
The software itself of course does not need the docker and can be run
with installed dependencies
•
Docker, however, provides reproducible results for everyone. The
images contain all the preinstalled dependencies
 
 
Learn how to download and install it on your system (admin rights required): 
https://www.docker.com/get-started
The fast way is to type in your terminal the following:
curl -fsSL https://get.docker.com -o get-docker.sh
sudo sh get-docker.sh
sudo curl -L "https://github.com/docker/compose/releases/download/1.27.4/docker-compose-$(uname -s)-$(uname -m)" -o
/usr/local/bin/docker-compose
sudo chmod +x /usr/local/bin/docker-compose
sudo ln -s /usr/local/bin/docker-compose /usr/bin/docker-compose
then pull the docker images with our tutorial materials as follows. Type these commands in your terminal:
sudo docker pull elavrik/tgb-php
sudo docker pull elavrik/tgb-cxx
sudo docker pull elavrik/tgb-py
 
Tutorial in docker environment
 
2.11.2020
 
E. Lavrik - Component databases online tutorial
 
4
 
 
Navigate to 
https://compdb.cbm.gsi.de
 
Data definition interface
 
2.11.2020
 
E. Lavrik - Component databases online tutorial
 
5
 
Open project -> Tutorial.json
 
2.11.2020
 
E. Lavrik - Component databases online tutorial
 
6
 
Edit Component
 
2.11.2020
 
E. Lavrik - Component databases online tutorial
 
7
 
Edit Module
 
2.11.2020
 
E. Lavrik - Component databases online tutorial
 
8
 
Generate server, Generate Client -> Web
 
2.11.2020
 
E. Lavrik - Component databases online tutorial
 
9
 
Generate server, Generate Client -> Web, unpack, put WebClient into PhpServer
 
2.11.2020
 
E. Lavrik - Component databases online tutorial
 
10
 
Go to Terminal, change directory to the unpacked projects. 
Run following commands after $
 
 
 
2.11.2020
 
E. Lavrik - Component databases online tutorial
 
11
 
It is ready when you see the message „PHP Development Server started“
 
2.11.2020
 
E. Lavrik - Component databases online tutorial
 
12
 
Server and Web GUI are ready. Use 
admin@example.com
 as login and 
test 
as password
The same interface is available 
https://compdb.cbm.gsi.de:5050/
 
2.11.2020
 
E. Lavrik - Component databases online tutorial
 
13
 
Go to component workspace. It is autogenerated for you.
 
2.11.2020
 
E. Lavrik - Component databases online tutorial
 
14
 
Go to Create New, enter some infos, click create new
 
2.11.2020
 
E. Lavrik - Component databases online tutorial
 
15
 
Go to Create New
 
2.11.2020
 
E. Lavrik - Component databases online tutorial
 
16
 
Go back to Component workspace, click Get All
 
2.11.2020
 
E. Lavrik - Component databases online tutorial
 
17
 
Go back to Data definition Interface and Generate C++ client. Unpack it to the PhpServer and go to docker subdirectory
 
2.11.2020
 
E. Lavrik - Component databases online tutorial
 
18
 
Execute following commands to run the container
 
 
 
2.11.2020
 
E. Lavrik - Component databases online tutorial
 
19
 
Inside the container go to /opt/cxxclient and type “. install“. The project will compile
 
 
 
2.11.2020
 
E. Lavrik - Component databases online tutorial
 
20
 
Edit TGenBaseConfig.json file to include the 
http://php:8008
 as the server address
php is the hostname of a docker container running the web server
 
 
 
2.11.2020
 
E. Lavrik - Component databases online tutorial
 
21
 
Edit TGenBaseConfig.json file to include the 
http://php:8008
 as the server address
php is the hostname of a docker container running the web server
 
root@462652bf4bcf:/opt/cxxclient# root -l
root [0] 
res = 
Tutorial
::Component::GetAll()
(std::vector<Tutorial::Component, std::allocator<Tutorial::Component> > &) {
 @0x564741ad7ba0, @0x564741ad7c88 }
root [1] 
res[0].Print
()
 Instance:
Id = 1
ModuleId = 1
Name = TestComponent
ChannelMap = 0x564741ad7be0
CalibrationMatrix = 0x564741ad7bf8
TestDate = 1604393671
QaPassed = 1
File =
Comment = Test
CreatedAt = 1604393694
UpdatedAt = 1604393694
root [2] 
res[0].GetCalibrationMatrix
()
(std::vector<std::vector<double> >) { { 1.0000000, 2.0000000 }, { 3.0000000, 4.0000000 } }
 
2.11.2020
 
E. Lavrik - Component databases online tutorial
 
22
 
Now you can run root prompt. Query all components a get the properties of the first one
 
root [3] 
m = res[0].GetModule
()
(std::unique_ptr<Tutorial::Module, std::default_delete<Tutorial::Module> > &) std::unique_ptr -> 0x5647461a2640
root [4] 
m->Print
()
 Instance:
Id = 1
Name = Test Module
AssemblyDate = 1604393711
Location = JINR
Comment =
CreatedAt = 1604393721
UpdatedAt = 1604393721
 
2.11.2020
 
E. Lavrik - Component databases online tutorial
 
23
 
Get the module to which the component from res[0] belongs and print ist properties
 
root [5] 
m->GetComponents
()
(std::vector<Tutorial::Component>) { @0x564741894dd0, @0x564741894eb8 }
 
2.11.2020
 
E. Lavrik - Component databases online tutorial
 
24
 
Get the components belonging to this module
 
root [6] 
m->GetAllVersions()[0].Print
()
 Instance:
Id = 1
Name = Test Module
AssemblyDate = 1604393711
Location = GSI
Comment =
CreatedAt = 1604393715
UpdatedAt = 1604393715
root [7] 
m->GetAllVersions()
[
1
]
.Print()
 Instance:
Id = 1
Name = Test Module
AssemblyDate = 1604393711
Location = JINR
Comment =
CreatedAt = 1604393721
UpdatedAt = 1604393721
 
2.11.2020
 
E. Lavrik - Component databases online tutorial
 
25
 
Get All versions of this module to see ist history. Example of logistics tracking
 
root [14] 
TGenBase
::ObjectStore obj
(TGenBase::ObjectStore &) @0x7f2f50f4b0a8
 
root [15] 
TGenBase
::ObjectStore::TestObject test
(TGenBase::ObjectStore::TestObject &) @0x7f2f50f4b118
root [16] test.SetParam("test")
 
root [17] obj.SetObjectJson
(
test
)
root [18] obj.Print
()
 Instance:
Id = -1
Name =
Object = {"Id":0,"Param":"test","CreatedAt":0}
CreatedAt = 1604395998
UpdatedAt = 1604395998
 
2.11.2020
 
E. Lavrik - Component databases online tutorial
 
26
 
Object Store. Allow storage of arbitrary objects via serialization. Root streamer, json and boost serializations supported
 
root [22] obj.SetObjectBoost
(
test
)
root [23] obj.Print
()
 Instance:
Id = -1
Name =
Object =new test
CreatedAt = 1604395998
UpdatedAt = 1604395998
 
root [25] obj.SetObjectRoot
(
&test
)
root [26] obj.Print
()
 Instance:
Id = -1
Name =
Object = QAAAHQAA9U+UNgAAAABAAAALAAkIbmV3IHRlc3QAAAAA
CreatedAt = 1604395998
UpdatedAt = 1604395998
 
2.11.2020
 
E. Lavrik - Component databases online tutorial
 
27
 
Object Store. Allow storage of arbitrary objects via serialization. Root streamer, json and boost serializations supported
 
root [29] obj.SetObjectJson(test)
root [30] obj.Store
()
root [31] objects = TGenBase::ObjectStore::GetAll()
(std::vector<TGenBase::ObjectStore, std::allocator<TGenBase::ObjectStore> > &) { @0x564749680ea0 }
root [32] objects[0].Print()
 Instance:
Id = 1
Name =
Object = {"Id":0,"Param":"new test","CreatedAt":0}
CreatedAt = 1604397486
UpdatedAt = 1604397486
root [33] obj.SetId(-1)
root [34] obj.Store()
root [35] TGenBase::ObjectStore::GetAll()
(std::vector<TGenBase::ObjectStore>) { @0x564749ff4750, @0x564749ff47c0 }
 
2.11.2020
 
E. Lavrik - Component databases online tutorial
 
28
 
Object Store. Storing and retrieving artbitrary objects, if you store with Id = -1 the new entry will be created. Otherwise new Version
 
2.11.2020
 
E. Lavrik - Component databases online tutorial
 
29
 
Now you can generate python client, download, unpack it and place into PhpServer directory.
Then you can follow the commands to run the container.
Edit the client config
 
2.11.2020
 
E. Lavrik - Component databases online tutorial
 
30
 
Once again. Edit TGenBaseConfig.json file to include the 
http://php:8008
 as the server address
php is the hostname of a docker container running the web server
 
2.11.2020
 
E. Lavrik - Component databases online tutorial
 
31
 
You are ready to write some python program
 
2.11.2020
 
E. Lavrik - Component databases online tutorial
 
32
 
The interfaces are the same for getting linked objects, creating new versions, etc.
 
2.11.2020
 
E. Lavrik - Component databases online tutorial
 
33
 
SQL-like Query Building is a powerful analysis tool. You can chain together many selection cuts, sort the output results.
The interfaces are similar in the C++ and Web

								

								

								

										

												
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Explore a detailed online tutorial covering various aspects of managing component databases, including finding information, setting up in a Docker environment, data definition interface, editing components and modules, and generating server/client web applications. Access documentation, docker setup, and central database server information for effective management.


								
    
																		
  •   Component Databases
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  •    Online Tutorial
    • 
																	
  •    Docker Environment
    • 
																	
  •    Data Definition
    • 
																	
  •    Web Applications
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  1. Component Component databases databases: online  : online tutorial tutorial Slide  Slide guide guide Evgeny Lavrik 2.11.2020 E. Lavrik - Component databases online tutorial 1
    2. 
            
            
            
  2. Where to find info and help?     Refer to the presentation at collaboration meeting  https://indico.gsi.de/event/10062/contributions/48478/     http://compdb.cbm.gsi.de is our central component database server,  accessible from everywhere, you can host your data there too!     Documentation: https://git.cbm.gsi.de/TGenBase/ClassGen     We have a mailing list CBM-COMPONENTDB@gsi.de     Email me e.lavrik@gsi.de 2.11.2020 E. Lavrik - Component databases online tutorial 2
    3. 
            
            
            
  3. Tutorial in docker environment     The software itself of course does not need the docker and can be run  with installed dependencies     Docker, however, provides reproducible results for everyone. The  images contain all the preinstalled dependencies Learn how to download and install it on your system (admin rights required): https://www.docker.com/get-started The fast way is to type in your terminal the following: curl -fsSL https://get.docker.com -o get-docker.sh sudo sh get-docker.sh sudo curl -L "https://github.com/docker/compose/releases/download/1.27.4/docker-compose-$(uname -s)-$(uname -m)" -o  /usr/local/bin/docker-compose sudo chmod +x /usr/local/bin/docker-compose sudo ln -s /usr/local/bin/docker-compose /usr/bin/docker-compose then pull the docker images with our tutorial materials as follows. Type these commands in your terminal: sudo docker pull elavrik/tgb-php sudo docker pull elavrik/tgb-cxx sudo docker pull elavrik/tgb-py 2.11.2020 E. Lavrik - Component databases online tutorial 3
    4. 
            
            
            
  4. Data definition interface Navigate to https://compdb.cbm.gsi.de 2.11.2020 E. Lavrik - Component databases online tutorial 4
    5. 
            
            
            
  5. Open project -> Tutorial.json 2.11.2020 E. Lavrik - Component databases online tutorial 5
    6. 
            
            
            
  6. Edit Component 2.11.2020 E. Lavrik - Component databases online tutorial 6
    7. 
            
            
            
  7. Edit Module 2.11.2020 E. Lavrik - Component databases online tutorial 7
    8. 
            
            
            
  8. Generate server, Generate Client -> Web 2.11.2020 E. Lavrik - Component databases online tutorial 8
    9. 
            
            
            
  9. Generate server, Generate Client -> Web, unpack, put WebClient into PhpServer 2.11.2020 E. Lavrik - Component databases online tutorial 9
    10. 
            
            
            
  10. Go to Terminal, change directory to the unpacked projects. Run following commands after $ 2.11.2020 E. Lavrik - Component databases online tutorial 10
    11. 
            
            
            
  11. It is ready when you see the message PHP Development Server started 2.11.2020 E. Lavrik - Component databases online tutorial 11
    12. 
            
            
            
  12. Server and Web GUI are ready. Use admin@example.com as login and test as password The same interface is available https://compdb.cbm.gsi.de:5050/ 2.11.2020 E. Lavrik - Component databases online tutorial 12
    13. 
            
            
            
  13. Go to component workspace. It is autogenerated for you. 2.11.2020 E. Lavrik - Component databases online tutorial 13
    14. 
            
            
            
  14. Go to Create New, enter some infos, click create new 2.11.2020 E. Lavrik - Component databases online tutorial 14
    15. 
            
            
            
  15. Go to Create New 2.11.2020 E. Lavrik - Component databases online tutorial 15
    16. 
            
            
            
  16. Go back to Component workspace, click Get All 2.11.2020 E. Lavrik - Component databases online tutorial 16
    17. 
            
            
            
  17. Go back to Data definition Interface and Generate C++ client. Unpack it to the PhpServer and go to docker subdirectory 2.11.2020 E. Lavrik - Component databases online tutorial 17
    18. 
            
            
            
  18. Execute following commands to run the container 2.11.2020 E. Lavrik - Component databases online tutorial 18
    19. 
            
            
            
  19. Inside the container go to /opt/cxxclient and type . install. The project will compile 2.11.2020 E. Lavrik - Component databases online tutorial 19
    20. 
            
            
            
  20. Edit TGenBaseConfig.json file to include the http://php:8008 as the server address php is the hostname of a docker container running the web server 2.11.2020 E. Lavrik - Component databases online tutorial 20
    21. 
            
            
            
  21. Edit TGenBaseConfig.json file to include the http://php:8008 as the server address php is the hostname of a docker container running the web server 2.11.2020 E. Lavrik - Component databases online tutorial 21
    22. 
            
            
            
  22. Now you can run root prompt. Query all components a get the properties of the first one root@462652bf4bcf:/opt/cxxclient# root -l root [0] res = Tutorial::Component::GetAll() (std::vector<Tutorial::Component, std::allocator<Tutorial::Component> > &) {  @0x564741ad7ba0, @0x564741ad7c88 } root [1] res[0].Print() Instance: Id = 1 ModuleId = 1 Name = TestComponent ChannelMap = 0x564741ad7be0 CalibrationMatrix = 0x564741ad7bf8 TestDate = 1604393671 QaPassed = 1 File = Comment = Test CreatedAt = 1604393694 UpdatedAt = 1604393694 root [2] res[0].GetCalibrationMatrix() (std::vector<std::vector<double> >) { { 1.0000000, 2.0000000 }, { 3.0000000, 4.0000000 } } 2.11.2020 E. Lavrik - Component databases online tutorial 22
    23. 
            
            
            
  23. Get the module to which the component from res[0] belongs and print ist properties root [3] m = res[0].GetModule() (std::unique_ptr<Tutorial::Module, std::default_delete<Tutorial::Module> > &) std::unique_ptr -> 0x5647461a2640 root [4] m->Print() Instance: Id = 1 Name = Test Module AssemblyDate = 1604393711 Location = JINR Comment = CreatedAt = 1604393721 UpdatedAt = 1604393721 2.11.2020 E. Lavrik - Component databases online tutorial 23
    24. 
            
            
            
  24. Get the components belonging to this module root [5] m->GetComponents() (std::vector<Tutorial::Component>) { @0x564741894dd0, @0x564741894eb8 } 2.11.2020 E. Lavrik - Component databases online tutorial 24
    25. 
            
            
            
  25. Get All versions of this module to see ist history. Example of logistics tracking root [6] m->GetAllVersions()[0].Print() Instance: Id = 1 Name = Test Module AssemblyDate = 1604393711 Location = GSI Comment = CreatedAt = 1604393715 UpdatedAt = 1604393715 root [7] m->GetAllVersions()[1].Print() Instance: Id = 1 Name = Test Module AssemblyDate = 1604393711 Location = JINR Comment = CreatedAt = 1604393721 UpdatedAt = 1604393721 2.11.2020 E. Lavrik - Component databases online tutorial 25
    26. 
            
            
            
  26. Object Store. Allow storage of arbitrary objects via serialization. Root streamer, json and boost serializations supported root [14] TGenBase::ObjectStore obj (TGenBase::ObjectStore &) @0x7f2f50f4b0a8 root [15] TGenBase::ObjectStore::TestObject test (TGenBase::ObjectStore::TestObject &) @0x7f2f50f4b118 root [16] test.SetParam("test") root [17] obj.SetObjectJson(test) root [18] obj.Print() Instance: Id = -1 Name = Object = {"Id":0,"Param":"test","CreatedAt":0} CreatedAt = 1604395998 UpdatedAt = 1604395998 2.11.2020 E. Lavrik - Component databases online tutorial 26
    27. 
            
            
            
  27. Object Store. Allow storage of arbitrary objects via serialization. Root streamer, json and boost serializations supported root [22] obj.SetObjectBoost(test) root [23] obj.Print() Instance: Id = -1 Name = Object =new test CreatedAt = 1604395998 UpdatedAt = 1604395998 root [25] obj.SetObjectRoot(&test) root [26] obj.Print() Instance: Id = -1 Name = Object = QAAAHQAA9U+UNgAAAABAAAALAAkIbmV3IHRlc3QAAAAA CreatedAt = 1604395998 UpdatedAt = 1604395998 2.11.2020 E. Lavrik - Component databases online tutorial 27
    28. 
            
            
            
  28. Object Store. Storing and retrieving artbitrary objects, if you store with Id = -1 the new entry will be created. Otherwise new Version root [29] obj.SetObjectJson(test) root [30] obj.Store() root [31] objects = TGenBase::ObjectStore::GetAll() (std::vector<TGenBase::ObjectStore, std::allocator<TGenBase::ObjectStore> > &) { @0x564749680ea0 } root [32] objects[0].Print() Instance: Id = 1 Name = Object = {"Id":0,"Param":"new test","CreatedAt":0} CreatedAt = 1604397486 UpdatedAt = 1604397486 root [33] obj.SetId(-1) root [34] obj.Store() root [35] TGenBase::ObjectStore::GetAll() (std::vector<TGenBase::ObjectStore>) { @0x564749ff4750, @0x564749ff47c0 } 2.11.2020 E. Lavrik - Component databases online tutorial 28
    29. 
            
            
            
  29. Now you can generate python client, download, unpack it and place into PhpServer directory. Then you can follow the commands to run the container. Edit the client config 2.11.2020 E. Lavrik - Component databases online tutorial 29
    30. 
            
            
            
  30. Once again. Edit TGenBaseConfig.json file to include the http://php:8008 as the server address php is the hostname of a docker container running the web server 2.11.2020 E. Lavrik - Component databases online tutorial 30
    31. 
            
            
            
  31. You are ready to write some python program 2.11.2020 E. Lavrik - Component databases online tutorial 31
    32. 
            
            
            
  32. The interfaces are the same for getting linked objects, creating new versions, etc. 2.11.2020 E. Lavrik - Component databases online tutorial 32
    33. 
            
            
            
  33. SQL-like Query Building is a powerful analysis tool. You can chain together many selection cuts, sort the output results. The interfaces are similar in the C++ and Web 2.11.2020 E. Lavrik - Component databases online tutorial 33
    34. 
            
            
            
							

							

					

					
					
					

						
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