Proteomics involves the study of proteins in organisms and encompasses various types such as functional proteomics and structural proteomics. This field has wide-ranging applications in areas like biomedical research, agriculture, and drug development. Utilizing techniques like mass spectrometry, pr

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FragPipe offers a comprehensive solution for DDA and DIA bottom-up proteomics analysis, supporting various advanced functionalities such as closed and open searches, FDR estimation, PTM discovery, and label-free quantification. It simplifies deep-learning-based rescoring and provides an easy-to-use

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Explore the intersection of deep learning and biotechnology, focusing on Word2Vec and its applications in protein structure prediction. Understand the transformation from discrete to continuous space, the challenges of traditional word representation methods, and the implications for computational l

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Explore the world of biological datasets, lipidomics, genomics, epigenomics, proteomics, and the application of omics in studying biological mechanisms, predicting outcomes, and identifying important variables. Dive into DNA, gene expression, methylation, and genetic datasets to unravel the complexi

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This content provides a detailed walkthrough of utilizing Perseus interface/functions for analyzing label-free and SILAC datasets in the field of proteomics. It covers loading, filtering, visualization, log transformation, rearrangement of columns, and advanced analysis techniques such as scatter pl

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Environment for targeted proteomics allows rapid processing of quantitative proteomics projects by integrating Skyline with CHORUS Cloud. The approach involves chromatography-based quantification, DIA chromatogram extraction, fit-for-purpose discovery proteomics, and a comparison of DIA versus SRM m

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